Presentations and Events at ASMS 2025

Talus Bio Presentations

Session	Title	Presenter
MP 224	Evaluating and optimizing transcription factor targets for a high‑throughput mass spectrometry‑based drug discovery platform	Daniele Canzani
MP 225	Profiling anthracycline toxicity and mechanisms in pediatric tumors using high‑throughput proteomics	Julia Robbins
TP 188	Timsbuktoolkit: Open‑source platform for on‑demand interactive peptide search on timsTOF DIA data	Sebastian Paez
TP 198	Extending LOD/LOQ Estimation and Quantitative Benchmarking for High‑Throughput Proteomics	Lindsay Pino
TP 244	TACTICIAN: A Hierarchical Linear Model for Identifying Functional Hits, Target Engagement, and Combined Hits in Proteomics‑Driven Drug Discovery	Lilly Tatka
TP 510	O Peptide Where Art Thou: A Recommender System to Find Missing Peptides Between Runs	Will Fondrie
WOH am 09:10	High‑Throughput Quantification of Chromatin‑Associated Proteins to Advance Neuroblastoma Therapeutic Discovery	Andrea Gutierrez
ThP 289	Enhancing an AI‑Driven Proteomics Drug Discovery Engine with Scalable Metadata Collection	Anastasiya Prymolenna

Event	Title	Organizers
Short Course 05	Machine Learning for Mass Spectrometry Data Analysis	Will Fondrie
Monday Workshop 03	Chemoproteomics: The Next Frontier for Drug Development (and More)	Lindsay Pino
Tuesday Workshop 01	De Novo Peptide Sequencing: Ready For Prime Time?	Will Fondrie
Wednesday Workshop 10	Entrepreneurship in Mass Spectrometry: Non‑Traditional Pathways for Scientific Innovation	Lindsay Pino
Wednesday Workshop 02	The Interface of Biomarker Discovery, Clinical Algorithm Development and Regulatory Oversight	Will Fondrie

Session	Title	Presenter
EvoSep User Meeting	High-Throughput Analysis of Transcription Factors Using 96-well Cell Culture, Drug Treatment, and Subcellular Fractionation	Julia Robbins
Bruker eXceed Symposia	Multiomics solutions for the post-genomic era: Proteomics Breakout Session “Profiling oncogenic transcription factors using mass spectrometry proteomics	Lindsay Pino
MOG	The Screen’s Gambit: Functional Chemoproteomics Accelerated by Compressed Sensing and Generative Models	Will Fondrie
MOH	Keep your friends close: Neighborhood based clustering for feature extraction in diaPASEF data	Sebastian Paez
WOF	Developing and optimizing mass spectrometry methods to improve detection of covalently modified peptides in complex lysates	Lindsay Pino
ThOH	TF-Scan: A high-throughput proteomics platform for transcription factor drug discovery	Daniele Canzani
MP 070	Evaluating mass spectrometry strategies for deep proteome profiling with subcellular fractionation	Andrea Gutierrez
TP 703	From seeding to separation: a 96-well format sample preparation protocol for cell-based high throughput proteomics	Julia Robbins

Session	Title	Presenter
ThP 055	Improved de novo peptide sequencing with higher quality training data	Melih Yilmaz
ThP 785	ThP 785 The Association of Biomolecular Resource Facilities Proteomics Standards Research Group (sPRG) Multi-Species Standard to Assist Quantitative Proteomics	Susan Weintraub

Event	Title	Organizers
Short Course 04	Machine Learning for Mass Spectrometry Data Analysis	Wout Bittremieux, Will Fondrie
Tuesday Workship 06	De Novo Peptide Sequencing Breakthroughs & Challenges	Melih Yilmaz, Konstantinos Kalogeropoulos, Wout Bittremieux, Will Fondrie, K. Eloff, Timothy Patrick Jenkins, A. Mabona, Bill Noble

Session	Title	Presenter
Skyline UGM	How sweet it is: Leveraging the nuclear envelope glycome for the automated extraction of proteins from cell nuclei	Julia Robbins
TOD	Library-free analysis of DIA experiments using a feature-centric approach	Sebastian Paez
WOC	Simultaneous In situ Pharmacological Profiling of Transcription Factors for Cancer Therapy	Lindsay Pino
MP 144	An atlas of reactive and functional chromatin-associated cysteines in cancer	Daniele Canzani
MP 389	Gopher: Fast Gene Ontology Enrichment Analysis for Quantitative Proteomic Data	Carolyn Allen
MP 586	Characterizing the effects of kinase inhibitors on the phosphorylation of transcription factors using subcellular fractionation	Andrea Gutierrez
TP 043	Diving deeper with depthcharge: A transformer deep learning framework for modeling mass spectrometry data	Will Fondrie
ThP 679	How sweet it is: Leveraging the nuclear envelope glycome for the automated extraction of proteins from cell nuclei	Julia Robbins

Session	Title	Presenter
WOD	Sequence-to-sequence translation from mass spectra to peptides with a transformer model	Melih Yilmaz
MP 192	The Neuropeptide Neuroparsin-A Regulates Caretaking Behavior in Leafcutter Ants	Michael Gilbert
MP 369	Crema: an open-source Python tool for target-decoy false discovery rate estimation	Andy Lin

Event	Title	Organizers
Short Course 08	Machine Learning for Mass Spectrometry Data Analysis	Wout Bittremieux, Will Fondrie
Monday Workshop 17	Using Casanovo for de novo peptide sequencing	Melih Yilmaz, William Noble, Will Fondrie
Tuesday Workshop 07	Data Independent Acquisition: After the Acquisition	Lindsay Pino, Lukas Reiter